Package: TDbook 0.0.6
Guangchuang Yu
TDbook: Companion Package for the Book "Data Integration, Manipulation and Visualization of Phylogenetic Trees" by Guangchuang Yu (2022, ISBN:9781032233574, doi:10.1201/9781003279242)
The companion package that provides all the datasets used in the book "Data Integration, Manipulation and Visualization of Phylogenetic Trees" by Guangchuang Yu (2022, ISBN:9781032233574, doi:10.1201/9781003279242).
Authors:
TDbook_0.0.6.tar.gz
TDbook_0.0.6.zip(r-4.5)TDbook_0.0.6.zip(r-4.4)TDbook_0.0.6.zip(r-4.3)
TDbook_0.0.6.tgz(r-4.4-any)TDbook_0.0.6.tgz(r-4.3-any)
TDbook_0.0.6.tar.gz(r-4.5-noble)TDbook_0.0.6.tar.gz(r-4.4-noble)
TDbook_0.0.6.tgz(r-4.4-emscripten)TDbook_0.0.6.tgz(r-4.3-emscripten)
TDbook.pdf |TDbook.html✨
TDbook/json (API)
| # Install 'TDbook' in R: |
| install.packages('TDbook', repos = c('https://yulab-smu.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/yulab-smu/tdbook/issues
Datasets:
- AA_sequence - Data set containing multiple sequence alignment information
- df_Candidaauris_data - Population genetics data No.1
- df_NJIDqgsS - Population genetics data No.2
- df_alleles - Allele table
- df_alltax_info - Data frame containing hierarchical relationship
- df_bar_data - Trait data
- df_barplot_attr - Data set of the abundance of microbes at the body sites of greatest prevalence
- df_difftax - Data frame containing taxa and factor information and pvalue
- df_info - Sampling information data set
- df_inode_data - Nodedata to be mapped to tree
- df_ring_heatmap - Data set of the abundance and types of microbes
- df_svl - Data frame containing slv information
- df_tip_data - Tipdata to be mapped to tree
- df_tippoint - Data set of the abundance and types of microbes
- dna_HPV58_aln - A DNAbin class to store the aligned sequnces of species of HPV58.tree
- text_RMI_tree - Tree to display with symbolic points indicating partitioned bootstrap values
- tree_Candidaauris - Tree No.1 to display with visualized population genetics data
- tree_HPV58 - Tree to display with dot and line plots of pairwise nucleotide sequence distances
- tree_NJIDqgsS - Tree No.2 to display with visualized population genetics data
- tree_anole - Tree to color with continuous state transition in edges
- tree_boots - Tree to be mapped to data
- tree_hmptree - Tree to display with multiple graphs for multi-dimensional data
- tree_long_branch_example - Tree to display with shrunk outlier long branch
- tree_nex - Tree to display with silhouettes from Phylopic
- tree_nwk - Tree to display with sampling information, SNP and Trait data
- tree_seq_nwk - Tree to display with multiple sequence alignment
- tree_treenwk_30.4.19 - Tree to group and highlight
Last updated 2 years agofrom:60b2de7f8d. Checks:OK: 7. Indexed: yes.
| Target | Result | Date |
|---|---|---|
| Doc / Vignettes | OK | Oct 12 2024 |
| R-4.5-win | OK | Oct 12 2024 |
| R-4.5-linux | OK | Oct 12 2024 |
| R-4.4-win | OK | Oct 12 2024 |
| R-4.4-mac | OK | Oct 12 2024 |
| R-4.3-win | OK | Oct 12 2024 |
| R-4.3-mac | OK | Oct 12 2024 |
Exports:
Dependencies:
