{
  "_id": "6a13eb00acfb0bcc41d2e558",
  "Package": "MMINP",
  "Title": "Microbe-Metabolite Interactions-Based Metabolic Profiles\nPredictor",
  "Version": "0.1.1",
  "Authors@R": "c(person(given = \"Wenli\",\nfamily = \"Tang\",\nrole = c(\"aut\", \"cre\"),\nemail = \"1071429394@qq.com\",\ncomment = c(ORCID = \"0000-0002-6141-5854\")),\nperson(given = \"Guangchuang\", family = \"Yu\",\nemail = \"guangchuangyu@gmail.com\",\nrole  = c(\"aut\", \"ths\"),\ncomment = c(ORCID = \"0000-0002-6485-8781\")))",
  "Description": "Implements a computational framework to predict microbial\ncommunity-based metabolic profiles with 'O2PLS' model. It\nprovides procedures of model training and prediction. Paired\nmicrobiome and metabolome data are needed for modeling, and the\ntrained model can be applied to predict metabolites of\nanalogous environments using new microbial feature abundances.",
  "License": "GPL (>= 3.0)",
  "URL": "https://github.com/YuLab-SMU/MMINP",
  "BugReports": "https://github.com/YuLab-SMU/MMINP/issues",
  "Encoding": "UTF-8",
  "LazyData": "true",
  "Roxygen": "list(markdown = TRUE)",
  "RoxygenNote": "7.2.3",
  "Config/testthat/edition": "3",
  "VignetteBuilder": "knitr",
  "Repository": "https://yulab-smu.r-universe.dev",
  "Date/Publication": "2023-03-17 03:19:07 UTC",
  "RemoteUrl": "https://github.com/yulab-smu/mminp",
  "RemoteRef": "HEAD",
  "RemoteSha": "77359aeb9af3419a9c93a186f1717d1326628a62",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-05-25 06:20:35 UTC",
    "User": "root"
  },
  "Author": "Wenli Tang [aut, cre] (ORCID: <https://orcid.org/0000-0002-6141-5854>),\nGuangchuang Yu [aut, ths] (ORCID:\n<https://orcid.org/0000-0002-6485-8781>)",
  "Maintainer": "Wenli Tang <1071429394@qq.com>",
  "MD5sum": "82ca3e12b75dae306e93016603cdf4bd",
  "_user": "yulab-smu",
  "_type": "src",
  "_file": "MMINP_0.1.1.tar.gz",
  "_fileid": "a49aba2c6270abfa834ce2e449deca96e621424211f31882378539469bbede33",
  "_filesize": 3739781,
  "_sha256": "a49aba2c6270abfa834ce2e449deca96e621424211f31882378539469bbede33",
  "_created": "2026-05-25T06:20:35.000Z",
  "_published": "2026-05-25T06:24:00.523Z",
  "_distro": "noble",
  "_jobs": [
    {
      "job": 77666150119,
      "time": 167,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "7192791568"
    },
    {
      "job": 77666150109,
      "time": 163,
      "config": "linux-release-x86_64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7192790666"
    },
    {
      "job": 77666150120,
      "time": 100,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "7192778442"
    },
    {
      "job": 77666150093,
      "time": 120,
      "config": "macos-release-arm64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7192782430"
    },
    {
      "job": 77665804570,
      "time": 205,
      "config": "source",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7192758212"
    },
    {
      "job": 77666150110,
      "time": 114,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7192781036"
    },
    {
      "job": 77666150111,
      "time": 115,
      "config": "windows-devel",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "7192781462"
    },
    {
      "job": 77666150129,
      "time": 131,
      "config": "windows-oldrel",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "7192784603"
    },
    {
      "job": 77666150112,
      "time": 125,
      "config": "windows-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7192783404"
    }
  ],
  "_buildurl": "https://github.com/r-universe/yulab-smu/actions/runs/26386408673",
  "_status": "success",
  "_host": "GitHub-Actions",
  "_upstream": "https://github.com/yulab-smu/mminp",
  "_commit": {
    "id": "77359aeb9af3419a9c93a186f1717d1326628a62",
    "author": "Guangchuang Yu <guangchuangyu@gmail.com>",
    "committer": "Guangchuang Yu <guangchuangyu@gmail.com>",
    "message": "add links and format code\n",
    "time": 1679023147
  },
  "_maintainer": {
    "name": "Wenli Tang",
    "email": "1071429394@qq.com",
    "login": "wenlitang",
    "description": "",
    "uuid": 61824833,
    "orcid": "0000-0002-6141-5854"
  },
  "_registered": true,
  "_dependencies": [
    {
      "package": "R",
      "version": ">= 4.1.0",
      "role": "Depends"
    },
    {
      "package": "magrittr",
      "version": ">= 2.0.1",
      "role": "Imports"
    },
    {
      "package": "OmicsPLS",
      "version": ">= 2.0.2",
      "role": "Imports"
    },
    {
      "package": "utils",
      "role": "Imports"
    },
    {
      "package": "stats",
      "role": "Imports"
    },
    {
      "package": "forecast",
      "role": "Imports"
    },
    {
      "package": "rmarkdown",
      "role": "Suggests"
    },
    {
      "package": "knitr",
      "role": "Suggests"
    },
    {
      "package": "prettydoc",
      "role": "Suggests"
    },
    {
      "package": "testthat",
      "version": ">= 3.0.0",
      "role": "Suggests"
    }
  ],
  "_owner": "yulab-smu",
  "_selfowned": true,
  "_usedby": 0,
  "_updates": [],
  "_tags": [],
  "_topics": [
    "metabolite-prediction",
    "metabolites",
    "microbes"
  ],
  "_stars": 16,
  "_contributors": [
    {
      "user": "wenlitang",
      "count": 27,
      "uuid": 61824833
    },
    {
      "user": "guangchuangyu",
      "count": 7,
      "uuid": 626539
    }
  ],
  "_userbio": {
    "uuid": 40430016,
    "type": "organization",
    "name": "Bioinformatics Group @ SMU",
    "description": "Research group led by Prof. Guangchuang Yu in School of Basic Medical Sciences, Southern Medical University"
  },
  "_downloads": {
    "count": 176,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/MMINP"
  },
  "_devurl": "https://github.com/yulab-smu/mminp",
  "_searchresults": 9,
  "_rbuild": "4.6.0",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/MMINP.html",
    "extra/readme.html",
    "extra/readme.md",
    "manual.pdf"
  ],
  "_homeurl": "https://github.com/yulab-smu/mminp",
  "_realowner": "yulab-smu",
  "_cranurl": true,
  "_releases": [
    {
      "version": "0.1.0",
      "date": "2022-07-04"
    }
  ],
  "_exports": [
    "checkInputdata",
    "compareFeatures",
    "filterFeatures",
    "get_Components",
    "MMINP.predict",
    "MMINP.preprocess",
    "MMINP.train",
    "O2PLSvip"
  ],
  "_datasets": [
    {
      "name": "MMINP_trained_model",
      "title": "(Data) A MMINP model",
      "object": "MMINP_trained_model",
      "class": [
        "mminp"
      ],
      "fields": [],
      "table": false,
      "tojson": false
    },
    {
      "name": "test_metab",
      "title": "(Data) Normalized metabolite abundances for MMINP prediction",
      "object": "test_metab",
      "class": [
        "data.frame"
      ],
      "fields": [
        "C00026",
        "C00064",
        "C00077",
        "C00106",
        "C00122",
        "C00123",
        "C00158",
        "C00178",
        "C00186",
        "C00188",
        "C00191",
        "C00209",
        "C00219",
        "C00243",
        "C00253",
        "C00255",
        "C00299",
        "C00300",
        "C00319",
        "C00366",
        "C00378",
        "C00387",
        "C00388",
        "C00407",
        "C00408",
        "C00534",
        "C00559",
        "C00712",
        "C00794",
        "C00836",
        "C00864",
        "C01035",
        "C01041",
        "C01262",
        "C01585",
        "C01595",
        "C01657",
        "C02528",
        "C02678",
        "C02714",
        "C02918",
        "C02989",
        "C02990",
        "C03196",
        "C03242",
        "C03626",
        "C04643",
        "C05465",
        "C05627",
        "C05629",
        "C05793",
        "C06423",
        "C06429",
        "C08316",
        "C08362",
        "C09069",
        "C10172",
        "C11002",
        "C12283",
        "C13790",
        "C14641",
        "C14829",
        "C16512",
        "C16527",
        "C16537",
        "C16939",
        "C17148",
        "C19615",
        "C00025",
        "C00042",
        "C00047",
        "C00065",
        "C00135",
        "C00141",
        "C00148",
        "C00183",
        "C00187",
        "C00195",
        "C00196",
        "C00217",
        "C00242",
        "C00262",
        "C00294",
        "C00296",
        "C00350",
        "C00474",
        "C00486",
        "C00491",
        "C00493",
        "C00624",
        "C00785",
        "C00805",
        "C00870",
        "C00898",
        "C01004",
        "C01019",
        "C01054",
        "C01152",
        "C01181",
        "C01530",
        "C02242",
        "C02735",
        "C02997",
        "C03793",
        "C04152",
        "C05463",
        "C05464",
        "C05545",
        "C05582",
        "C05607",
        "C05795",
        "C05984",
        "C06424",
        "C07363",
        "C08277",
        "C08323",
        "C11251",
        "C13044",
        "C14533",
        "C14828",
        "C15441",
        "C15517",
        "C15557",
        "C15571",
        "C16357",
        "C16361",
        "C17647",
        "C18319",
        "C20522",
        "C20827"
      ],
      "rows": 65,
      "table": true,
      "tojson": true
    },
    {
      "name": "test_metag",
      "title": "(Data) Normalized gene family abundances for MMINP prediction",
      "object": "test_metag",
      "class": [
        "data.frame"
      ],
      "fields": [
        "K00005",
        "K00008",
        "K00009",
        "K00012",
        "K00016",
        "K00018",
        "K00027",
        "K00031",
        "K00033",
        "K00036",
        "K00040",
        "K00041",
        "K00042",
        "K00046",
        "K00048",
        "K00052",
        "K00053",
        "K00054",
        "K00057",
        "K00058",
        "K00059",
        "K00060",
        "K00068",
        "K00074",
        "K00075",
        "K00076",
        "K00077",
        "K00088",
        "K00094",
        "K00097",
        "K00099",
        "K00133",
        "K00134",
        "K00145",
        "K00147",
        "K00169",
        "K00174",
        "K00179",
        "K00207",
        "K00215",
        "K00254",
        "K00259",
        "K00261",
        "K00265",
        "K00275",
        "K00278",
        "K00281",
        "K00286",
        "K00290",
        "K00297",
        "K00301",
        "K00364",
        "K00382",
        "K00383",
        "K00384",
        "K00390",
        "K00394",
        "K00399",
        "K00440",
        "K00527",
        "K00532",
        "K00547",
        "K00548",
        "K00549",
        "K00558",
        "K00560",
        "K00561",
        "K00573",
        "K00574",
        "K00577",
        "K00598",
        "K00600",
        "K00602",
        "K00604",
        "K00605",
        "K00606",
        "K00611",
        "K00615",
        "K00625",
        "K00626",
        "K00633",
        "K00639",
        "K00640",
        "K00645",
        "K00648",
        "K00652",
        "K00656",
        "K00661",
        "K00674",
        "K00677",
        "K00684",
        "K00700",
        "K00703",
        "K00721",
        "K00728",
        "K00748",
        "K00757",
        "K00758",
        "K00759",
        "K00760",
        "K00761",
        "K00763",
        "K00764",
        "K00765",
        "K00766",
        "K00767",
        "K00768",
        "K00769",
        "K00773",
        "K00783",
        "K00784",
        "K00789",
        "K00790",
        "K00791",
        "K00793",
        "K00794",
        "K00797",
        "K00798",
        "K00817",
        "K00820",
        "K00826",
        "K00831",
        "K00833",
        "K00847",
        "K00848",
        "K00849",
        "K00852",
        "K00853",
        "K00854",
        "K00857",
        "K00858",
        "K00864",
        "K00867",
        "K00868",
        "K00873",
        "K00874",
        "K00876",
        "K00878",
        "K00879",
        "K00887",
        "K00901",
        "K00912",
        "K00917",
        "K00919",
        "K00925",
        "K00927",
        "K00928",
        "K00929",
        "K00931",
        "K00937",
        "K00940",
        "K00942",
        "K00943",
        "K00945",
        "K00946",
        "K00948",
        "K00949",
        "K00962",
        "K00963",
        "K00965",
        "K00973",
        "K00974",
        "K00975",
        "K00978",
        "K00979",
        "K00980",
        "K00981",
        "K00989",
        "K00991",
        "K00995",
        "K00996",
        "K00997",
        "K00998",
        "K01000",
        "K01006",
        "K01008",
        "K01012",
        "K01027",
        "K01042",
        "K01051",
        "K01057",
        "K01077",
        "K01079",
        "K01081",
        "K01096",
        "K01129",
        "K01139",
        "K01142",
        "K01151",
        "K01153",
        "K01155",
        "K01159",
        "K01176",
        "K01179",
        "K01182",
        "K01186",
        "K01188",
        "K01190",
        "K01193",
        "K01195",
        "K01200",
        "K01201",
        "K01205",
        "K01206",
        "K01207",
        "K01209",
        "K01215",
        "K01218",
        "K01220",
        "K01222",
        "K01224",
        "K01226",
        "K01232",
        "K01243",
        "K01246",
        "K01251",
        "K01258",
        "K01259",
        "K01265",
        "K01271",
        "K01273",
        "K01278",
        "K01281",
        "K01299",
        "K01304",
        "K01338",
        "K01354",
        "K01356",
        "K01358",
        "K01372",
        "K01424",
        "K01433",
        "K01438",
        "K01439",
        "K01442",
        "K01451",
        "K01462",
        "K01464",
        "K01468",
        "K01470",
        "K01478",
        "K01480",
        "K01486",
        "K01487",
        "K01488",
        "K01489",
        "K01492",
        "K01493",
        "K01494",
        "K01495",
        "K01496",
        "K01497",
        "K01507",
        "K01512",
        "K01517",
        "K01520",
        "K01523",
        "K01560",
        "K01580",
        "K01582",
        "K01583",
        "K01588",
        "K01589",
        "K01595",
        "K01596",
        "K01598",
        "K01599",
        "K01610",
        "K01611",
        "K01613",
        "K01619",
        "K01623",
        "K01625",
        "K01626",
        "K01627",
        "K01628",
        "K01629",
        "K01635",
        "K01639",
        "K01647",
        "K01649",
        "K01652",
        "K01659",
        "K01661",
        "K01662",
        "K01664",
        "K01666",
        "K01667",
        "K01676",
        "K01681",
        "K01685",
        "K01686",
        "K01687",
        "K01689",
        "K01692",
        "K01693",
        "K01698",
        "K01709",
        "K01710",
        "K01711",
        "K01714",
        "K01719",
        "K01733",
        "K01734",
        "K01736",
        "K01739",
        "K01744",
        "K01745",
        "K01749",
        "K01751",
        "K01752",
        "K01754",
        "K01755",
        "K01756",
        "K01759",
        "K01772",
        "K01776",
        "K01778",
        "K01779",
        "K01783",
        "K01784",
        "K01785",
        "K01787",
        "K01790",
        "K01791",
        "K01803",
        "K01804",
        "K01805",
        "K01807",
        "K01810",
        "K01812",
        "K01814",
        "K01815",
        "K01820",
        "K01823",
        "K01834",
        "K01835",
        "K01838",
        "K01845",
        "K01847",
        "K01854",
        "K01856",
        "K01858",
        "K01866",
        "K01867",
        "K01868",
        "K01869",
        "K01870",
        "K01872",
        "K01873",
        "K01874",
        "K01875",
        "K01880",
        "K01883",
        "K01885",
        "K01886",
        "K01887",
        "K01889",
        "K01892",
        "K01893",
        "K01895",
        "K01897",
        "K01902",
        "K01906",
        "K01910",
        "K01911",
        "K01912",
        "K01914",
        "K01915",
        "K01916",
        "K01921",
        "K01924",
        "K01925",
        "K01928",
        "K01929",
        "K01937",
        "K01938",
        "K01939",
        "K01940",
        "K01947",
        "K01950",
        "K01951",
        "K01952",
        "K01953",
        "K01958",
        "K01972",
        "K02079",
        "K02169",
        "K02188",
        "K02190",
        "K02203",
        "K02226",
        "K02233",
        "K02345",
        "K02363",
        "K02377",
        "K02464",
        "K02492",
        "K02493",
        "K02528",
        "K02548",
        "K02549",
        "K02551",
        "K02563",
        "K02564",
        "K02586",
        "K02641",
        "K03040",
        "K03077",
        "K03100",
        "K03101",
        "K03147",
        "K03149",
        "K03151",
        "K03177",
        "K03216",
        "K03271",
        "K03274",
        "K03335",
        "K03338",
        "K03340",
        "K03367",
        "K03385",
        "K03412",
        "K03426",
        "K03430",
        "K03431",
        "K03438",
        "K03439",
        "K03465",
        "K03473",
        "K03474",
        "K03517",
        "K03534",
        "K03601",
        "K03644",
        "K03684",
        "K03685",
        "K03735",
        "K03752",
        "K03778",
        "K03779",
        "K03781",
        "K03783",
        "K03797",
        "K03801",
        "K03814",
        "K03841",
        "K04068",
        "K04094",
        "K04564",
        "K04567",
        "K04720",
        "K05306",
        "K05343",
        "K05366",
        "K05822",
        "K05823",
        "K05878",
        "K05919",
        "K05966",
        "K05985",
        "K06012",
        "K06016",
        "K06041",
        "K06113",
        "K06168",
        "K06173",
        "K06215",
        "K06223",
        "K06281",
        "K06399",
        "K06726",
        "K06879",
        "K06920",
        "K06941",
        "K06989",
        "K07056",
        "K07067",
        "K07106",
        "K07173",
        "K07304",
        "K07469",
        "K07560",
        "K07566",
        "K07568",
        "K07636",
        "K07749",
        "K08483",
        "K08963",
        "K09011",
        "K09458",
        "K09759",
        "K09761",
        "K09903",
        "K09913",
        "K10026",
        "K10206",
        "K10536",
        "K10778",
        "K10804",
        "K11263",
        "K11717",
        "K11753",
        "K11991",
        "K12267",
        "K12506",
        "K12524",
        "K12573",
        "K13059",
        "K13542",
        "K13714",
        "K13799",
        "K13853",
        "K13923",
        "K13924",
        "K14153",
        "K14170",
        "K14441",
        "K14652",
        "K14681",
        "K15371",
        "K15429",
        "K15460",
        "K15531",
        "K15533",
        "K15633",
        "K15778",
        "K15780",
        "K15904",
        "K15918",
        "K15984",
        "K16147",
        "K16153",
        "K16212",
        "K16213",
        "K16329",
        "K17828",
        "K17836",
        "K17865",
        "K18123",
        "K18649",
        "K18866",
        "K19271",
        "K19272",
        "K19405",
        "K00011",
        "K00025",
        "K00106",
        "K00234",
        "K00264",
        "K00323",
        "K00522",
        "K00524",
        "K00861",
        "K01094",
        "K01164",
        "K01189",
        "K01390",
        "K01427",
        "K01440",
        "K01514",
        "K01672",
        "K01694",
        "K01798",
        "K01930",
        "K03139",
        "K03400",
        "K04119",
        "K06210",
        "K08070",
        "K08264",
        "K08892",
        "K09065",
        "K09567",
        "K10047",
        "K10781",
        "K11126",
        "K11204",
        "K11517",
        "K12407",
        "K12409",
        "K12526",
        "K12811",
        "K13245",
        "K13381",
        "K13465",
        "K13540",
        "K13624",
        "K13713",
        "K13800",
        "K13810",
        "K13951",
        "K13967",
        "K13998",
        "K14152",
        "K14163",
        "K14208",
        "K14454",
        "K14621",
        "K14677",
        "K15033",
        "K15779",
        "K15864",
        "K15916",
        "K15920",
        "K17069",
        "K17758",
        "K18065",
        "K18206",
        "K18533",
        "K18696",
        "K19562",
        "K20498",
        "K21071",
        "K21138",
        "K21352",
        "K21929",
        "K21977",
        "K22101",
        "K22316",
        "K22478",
        "K22503",
        "K23265",
        "K23987",
        "K23998",
        "K24017",
        "K24102",
        "K24182"
      ],
      "rows": 65,
      "table": true,
      "tojson": true
    },
    {
      "name": "train_metab",
      "title": "(Data) Normalized metabolite abundances for MMINP training",
      "object": "train_metab",
      "class": [
        "data.frame"
      ],
      "fields": [
        "C00026",
        "C00064",
        "C00077",
        "C00106",
        "C00114",
        "C00122",
        "C00123",
        "C00158",
        "C00178",
        "C00186",
        "C00188",
        "C00191",
        "C00209",
        "C00219",
        "C00243",
        "C00253",
        "C00255",
        "C00299",
        "C00300",
        "C00319",
        "C00366",
        "C00378",
        "C00387",
        "C00388",
        "C00407",
        "C00408",
        "C00534",
        "C00559",
        "C00712",
        "C00794",
        "C00836",
        "C00864",
        "C01035",
        "C01041",
        "C01262",
        "C01585",
        "C01595",
        "C01657",
        "C02528",
        "C02678",
        "C02714",
        "C02918",
        "C02989",
        "C02990",
        "C03196",
        "C03242",
        "C03626",
        "C04643",
        "C05465",
        "C05627",
        "C05629",
        "C05793",
        "C06423",
        "C06429",
        "C08316",
        "C08362",
        "C09069",
        "C10172",
        "C11002",
        "C12283",
        "C13790",
        "C14641",
        "C14829",
        "C16512",
        "C16527",
        "C16537",
        "C16939",
        "C17148",
        "C19615",
        "C00025",
        "C00042",
        "C00047",
        "C00065",
        "C00135",
        "C00141",
        "C00148",
        "C00183",
        "C00187",
        "C00195",
        "C00196",
        "C00217",
        "C00242",
        "C00262",
        "C00294",
        "C00295",
        "C00296",
        "C00350",
        "C00474",
        "C00486",
        "C00491",
        "C00493",
        "C00624",
        "C00785",
        "C00805",
        "C00870",
        "C00898",
        "C01004",
        "C01019",
        "C01054",
        "C01152",
        "C01181",
        "C01530",
        "C02242",
        "C02735",
        "C02997",
        "C03793",
        "C04152",
        "C05463",
        "C05464",
        "C05545",
        "C05582",
        "C05607",
        "C05795",
        "C05984",
        "C06424",
        "C07363",
        "C08277",
        "C08323",
        "C09209",
        "C11251",
        "C13044",
        "C13235",
        "C13861",
        "C14533",
        "C14828",
        "C15441",
        "C15517",
        "C15557",
        "C15571",
        "C16357",
        "C16361",
        "C17647",
        "C18319",
        "C20522",
        "C20827"
      ],
      "rows": 155,
      "table": true,
      "tojson": true
    },
    {
      "name": "train_metag",
      "title": "(Data) Normalized gene family abundances for MMINP training",
      "object": "train_metag",
      "class": [
        "data.frame"
      ],
      "fields": [
        "K00002",
        "K00005",
        "K00008",
        "K00009",
        "K00012",
        "K00016",
        "K00018",
        "K00027",
        "K00031",
        "K00033",
        "K00036",
        "K00040",
        "K00041",
        "K00042",
        "K00046",
        "K00048",
        "K00052",
        "K00053",
        "K00054",
        "K00057",
        "K00058",
        "K00059",
        "K00060",
        "K00065",
        "K00068",
        "K00074",
        "K00075",
        "K00076",
        "K00077",
        "K00088",
        "K00094",
        "K00097",
        "K00099",
        "K00111",
        "K00121",
        "K00133",
        "K00134",
        "K00145",
        "K00147",
        "K00169",
        "K00174",
        "K00179",
        "K00215",
        "K00239",
        "K00254",
        "K00259",
        "K00261",
        "K00265",
        "K00275",
        "K00278",
        "K00281",
        "K00286",
        "K00290",
        "K00297",
        "K00301",
        "K00322",
        "K00344",
        "K00355",
        "K00362",
        "K00364",
        "K00380",
        "K00382",
        "K00383",
        "K00384",
        "K00390",
        "K00394",
        "K00428",
        "K00527",
        "K00532",
        "K00547",
        "K00548",
        "K00549",
        "K00558",
        "K00560",
        "K00561",
        "K00564",
        "K00573",
        "K00574",
        "K00598",
        "K00600",
        "K00602",
        "K00604",
        "K00605",
        "K00606",
        "K00611",
        "K00615",
        "K00625",
        "K00626",
        "K00627",
        "K00633",
        "K00639",
        "K00640",
        "K00645",
        "K00647",
        "K00648",
        "K00652",
        "K00656",
        "K00657",
        "K00658",
        "K00661",
        "K00674",
        "K00677",
        "K00684",
        "K00690",
        "K00700",
        "K00703",
        "K00728",
        "K00748",
        "K00757",
        "K00758",
        "K00759",
        "K00760",
        "K00761",
        "K00763",
        "K00764",
        "K00765",
        "K00766",
        "K00767",
        "K00768",
        "K00769",
        "K00773",
        "K00783",
        "K00784",
        "K00789",
        "K00790",
        "K00791",
        "K00793",
        "K00794",
        "K00797",
        "K00798",
        "K00806",
        "K00817",
        "K00820",
        "K00823",
        "K00826",
        "K00831",
        "K00832",
        "K00833",
        "K00847",
        "K00848",
        "K00849",
        "K00851",
        "K00852",
        "K00853",
        "K00854",
        "K00855",
        "K00857",
        "K00858",
        "K00864",
        "K00867",
        "K00868",
        "K00873",
        "K00874",
        "K00876",
        "K00878",
        "K00879",
        "K00880",
        "K00882",
        "K00887",
        "K00899",
        "K00901",
        "K00906",
        "K00912",
        "K00917",
        "K00919",
        "K00925",
        "K00927",
        "K00928",
        "K00929",
        "K00931",
        "K00937",
        "K00938",
        "K00940",
        "K00942",
        "K00943",
        "K00945",
        "K00946",
        "K00948",
        "K00949",
        "K00962",
        "K00963",
        "K00965",
        "K00973",
        "K00974",
        "K00975",
        "K00978",
        "K00979",
        "K00981",
        "K00989",
        "K00991",
        "K00995",
        "K00996",
        "K00997",
        "K00998",
        "K01000",
        "K01006",
        "K01007",
        "K01008",
        "K01012",
        "K01042",
        "K01051",
        "K01057",
        "K01069",
        "K01070",
        "K01077",
        "K01079",
        "K01081",
        "K01085",
        "K01096",
        "K01129",
        "K01130",
        "K01139",
        "K01142",
        "K01151",
        "K01153",
        "K01155",
        "K01159",
        "K01176",
        "K01179",
        "K01182",
        "K01186",
        "K01188",
        "K01190",
        "K01193",
        "K01194",
        "K01195",
        "K01200",
        "K01201",
        "K01205",
        "K01206",
        "K01207",
        "K01209",
        "K01218",
        "K01220",
        "K01222",
        "K01224",
        "K01226",
        "K01232",
        "K01243",
        "K01246",
        "K01247",
        "K01251",
        "K01258",
        "K01259",
        "K01265",
        "K01266",
        "K01271",
        "K01273",
        "K01281",
        "K01299",
        "K01304",
        "K01338",
        "K01356",
        "K01358",
        "K01372",
        "K01414",
        "K01419",
        "K01424",
        "K01433",
        "K01434",
        "K01438",
        "K01439",
        "K01442",
        "K01451",
        "K01462",
        "K01464",
        "K01468",
        "K01478",
        "K01480",
        "K01486",
        "K01488",
        "K01489",
        "K01492",
        "K01493",
        "K01494",
        "K01495",
        "K01496",
        "K01497",
        "K01507",
        "K01512",
        "K01517",
        "K01520",
        "K01523",
        "K01524",
        "K01525",
        "K01560",
        "K01575",
        "K01580",
        "K01581",
        "K01582",
        "K01583",
        "K01588",
        "K01589",
        "K01595",
        "K01596",
        "K01598",
        "K01599",
        "K01610",
        "K01611",
        "K01613",
        "K01619",
        "K01623",
        "K01625",
        "K01626",
        "K01627",
        "K01628",
        "K01629",
        "K01635",
        "K01637",
        "K01638",
        "K01639",
        "K01647",
        "K01649",
        "K01652",
        "K01659",
        "K01661",
        "K01662",
        "K01664",
        "K01666",
        "K01667",
        "K01668",
        "K01676",
        "K01681",
        "K01684",
        "K01685",
        "K01686",
        "K01687",
        "K01689",
        "K01692",
        "K01693",
        "K01698",
        "K01699",
        "K01709",
        "K01710",
        "K01711",
        "K01712",
        "K01714",
        "K01719",
        "K01733",
        "K01734",
        "K01736",
        "K01739",
        "K01744",
        "K01745",
        "K01749",
        "K01751",
        "K01752",
        "K01754",
        "K01755",
        "K01756",
        "K01759",
        "K01772",
        "K01776",
        "K01778",
        "K01779",
        "K01783",
        "K01784",
        "K01785",
        "K01787",
        "K01790",
        "K01791",
        "K01803",
        "K01804",
        "K01805",
        "K01807",
        "K01810",
        "K01812",
        "K01814",
        "K01815",
        "K01819",
        "K01820",
        "K01823",
        "K01834",
        "K01835",
        "K01838",
        "K01845",
        "K01847",
        "K01854",
        "K01856",
        "K01858",
        "K01866",
        "K01867",
        "K01868",
        "K01869",
        "K01870",
        "K01872",
        "K01873",
        "K01874",
        "K01875",
        "K01880",
        "K01883",
        "K01885",
        "K01886",
        "K01887",
        "K01889",
        "K01892",
        "K01893",
        "K01895",
        "K01897",
        "K01902",
        "K01906",
        "K01910",
        "K01911",
        "K01912",
        "K01914",
        "K01915",
        "K01916",
        "K01920",
        "K01921",
        "K01924",
        "K01925",
        "K01928",
        "K01929",
        "K01937",
        "K01938",
        "K01939",
        "K01940",
        "K01947",
        "K01950",
        "K01951",
        "K01952",
        "K01953",
        "K01958",
        "K01972",
        "K02079",
        "K02169",
        "K02170",
        "K02188",
        "K02190",
        "K02203",
        "K02226",
        "K02233",
        "K02345",
        "K02363",
        "K02377",
        "K02427",
        "K02431",
        "K02464",
        "K02492",
        "K02493",
        "K02517",
        "K02528",
        "K02536",
        "K02548",
        "K02549",
        "K02551",
        "K02558",
        "K02563",
        "K02564",
        "K02586",
        "K02641",
        "K02851",
        "K02852",
        "K03040",
        "K03077",
        "K03078",
        "K03079",
        "K03100",
        "K03101",
        "K03147",
        "K03148",
        "K03149",
        "K03150",
        "K03151",
        "K03177",
        "K03182",
        "K03216",
        "K03218",
        "K03270",
        "K03271",
        "K03274",
        "K03335",
        "K03338",
        "K03340",
        "K03342",
        "K03367",
        "K03385",
        "K03412",
        "K03426",
        "K03430",
        "K03431",
        "K03438",
        "K03439",
        "K03465",
        "K03472",
        "K03473",
        "K03474",
        "K03501",
        "K03517",
        "K03534",
        "K03574",
        "K03582",
        "K03601",
        "K03635",
        "K03644",
        "K03649",
        "K03684",
        "K03685",
        "K03735",
        "K03752",
        "K03778",
        "K03779",
        "K03781",
        "K03783",
        "K03797",
        "K03801",
        "K03814",
        "K03841",
        "K04068",
        "K04072",
        "K04094",
        "K04564",
        "K04567",
        "K04720",
        "K04771",
        "K05306",
        "K05343",
        "K05366",
        "K05606",
        "K05774",
        "K05822",
        "K05823",
        "K05878",
        "K05919",
        "K05946",
        "K05966",
        "K05985",
        "K05995",
        "K06012",
        "K06016",
        "K06041",
        "K06113",
        "K06120",
        "K06164",
        "K06168",
        "K06173",
        "K06176",
        "K06180",
        "K06215",
        "K06221",
        "K06223",
        "K06281",
        "K06399",
        "K06726",
        "K06879",
        "K06920",
        "K06941",
        "K06968",
        "K06970",
        "K06989",
        "K07056",
        "K07067",
        "K07106",
        "K07173",
        "K07304",
        "K07320",
        "K07469",
        "K07560",
        "K07566",
        "K07568",
        "K07636",
        "K07749",
        "K08092",
        "K08316",
        "K08483",
        "K08680",
        "K08963",
        "K09001",
        "K09011",
        "K09022",
        "K09458",
        "K09759",
        "K09761",
        "K09903",
        "K09913",
        "K10026",
        "K10206",
        "K10536",
        "K10778",
        "K10804",
        "K11263",
        "K11444",
        "K11717",
        "K11753",
        "K11782",
        "K11991",
        "K12267",
        "K12506",
        "K12524",
        "K12573",
        "K13542",
        "K13694",
        "K13714",
        "K13799",
        "K13853",
        "K13923",
        "K13924",
        "K14153",
        "K14170",
        "K14260",
        "K14441",
        "K14652",
        "K14681",
        "K15331",
        "K15371",
        "K15396",
        "K15429",
        "K15460",
        "K15519",
        "K15531",
        "K15633",
        "K15778",
        "K15780",
        "K15904",
        "K15918",
        "K15984",
        "K16011",
        "K16147",
        "K16153",
        "K16212",
        "K16213",
        "K16329",
        "K17722",
        "K17828",
        "K17836",
        "K17865",
        "K18123",
        "K18649",
        "K18866",
        "K19268",
        "K19270",
        "K19271",
        "K19272",
        "K00025",
        "K00106",
        "K00234",
        "K00264",
        "K00323",
        "K00522",
        "K00524",
        "K00654",
        "K00804",
        "K00861",
        "K01094",
        "K01164",
        "K01189",
        "K01390",
        "K01427",
        "K01440",
        "K01514",
        "K01672",
        "K01694",
        "K01763",
        "K01798",
        "K01851",
        "K01930",
        "K03139",
        "K03400",
        "K04119",
        "K05994",
        "K06210",
        "K07508",
        "K07758",
        "K08070",
        "K08264",
        "K08660",
        "K08892",
        "K09065",
        "K09567",
        "K10047",
        "K10781",
        "K11126",
        "K11141",
        "K11142",
        "K11204",
        "K11517",
        "K12407",
        "K12409",
        "K12526",
        "K12811",
        "K13245",
        "K13381",
        "K13465",
        "K13540",
        "K13624",
        "K13713",
        "K13800",
        "K13810",
        "K13951",
        "K13967",
        "K13998",
        "K14085",
        "K14152",
        "K14163",
        "K14208",
        "K14272",
        "K14376",
        "K14454",
        "K14621",
        "K14677",
        "K15033",
        "K15333",
        "K15422",
        "K15779",
        "K15864",
        "K15916",
        "K15920",
        "K17069",
        "K17609",
        "K17758",
        "K18065",
        "K18240",
        "K18533",
        "K18696",
        "K19562",
        "K19802",
        "K20498",
        "K21071",
        "K21138",
        "K21352",
        "K21929",
        "K21977",
        "K22101",
        "K22316",
        "K22478",
        "K22503",
        "K23265",
        "K23461",
        "K23987",
        "K23998",
        "K24017",
        "K24102",
        "K24182"
      ],
      "rows": 155,
      "table": true,
      "tojson": true
    }
  ],
  "_help": [
    {
      "page": "calOrthVIP",
      "title": "Calculation of the orthogonal variable influence on projection",
      "topics": [
        "calOrthVIP"
      ]
    },
    {
      "page": "calPredVIP",
      "title": "Calculation of the predictive variable influence on projection",
      "topics": [
        "calPredVIP"
      ]
    },
    {
      "page": "checkInputdata",
      "title": "Check if input data satisfies input conditions",
      "topics": [
        "checkInputdata"
      ]
    },
    {
      "page": "compareFeatures",
      "title": "Compare features' abundance obtained by prediction and measurement.",
      "topics": [
        "compareFeatures"
      ]
    },
    {
      "page": "filterFeatures",
      "title": "Filter features of input table according to prevalence and/or abundance",
      "topics": [
        "filterFeatures"
      ]
    },
    {
      "page": "get_Components",
      "title": "Estimate components for O2-PLS method",
      "topics": [
        "get_Components"
      ]
    },
    {
      "page": "get_cvo2mComponent",
      "title": "get components number from Cross-validate procedure of O2PLS",
      "topics": [
        "get_cvo2mComponent"
      ]
    },
    {
      "page": "MMINP_trained_model",
      "title": "(Data) A MMINP model",
      "topics": [
        "MMINP_trained_model"
      ]
    },
    {
      "page": "MMINP.predict",
      "title": "Predict metabolites from new microbiome samples using MMINP model.",
      "topics": [
        "MMINP.predict"
      ]
    },
    {
      "page": "MMINP.preprocess",
      "title": "Data Preprocessing function for MMINP",
      "topics": [
        "MMINP.preprocess"
      ]
    },
    {
      "page": "MMINP.train",
      "title": "Train MMINP model using paired microbial features and metabolites data",
      "topics": [
        "MMINP.train"
      ]
    },
    {
      "page": "O2PLSvip",
      "title": "Evaluate the importance of variables in O2PLS models",
      "topics": [
        "O2PLSvip"
      ]
    },
    {
      "page": "print.mminp",
      "title": "Print function for MMINP.train",
      "topics": [
        "print.mminp"
      ]
    },
    {
      "page": "ssd",
      "title": "estimation of the sum of squares of deviations",
      "topics": [
        "ssd"
      ]
    },
    {
      "page": "test_metab",
      "title": "(Data) Normalized metabolite abundances for MMINP prediction",
      "topics": [
        "test_metab"
      ]
    },
    {
      "page": "test_metag",
      "title": "(Data) Normalized gene family abundances for MMINP prediction",
      "topics": [
        "test_metag"
      ]
    },
    {
      "page": "train_metab",
      "title": "(Data) Normalized metabolite abundances for MMINP training",
      "topics": [
        "train_metab"
      ]
    },
    {
      "page": "train_metag",
      "title": "(Data) Normalized gene family abundances for MMINP training",
      "topics": [
        "train_metag"
      ]
    }
  ],
  "_readme": "https://github.com/yulab-smu/mminp/raw/HEAD/README.md",
  "_rundeps": [
    "cli",
    "colorspace",
    "cpp11",
    "dplyr",
    "farver",
    "forecast",
    "fracdiff",
    "generics",
    "ggplot2",
    "glue",
    "gtable",
    "isoband",
    "labeling",
    "lattice",
    "lifecycle",
    "lmtest",
    "magrittr",
    "Matrix",
    "nlme",
    "nnet",
    "OmicsPLS",
    "pillar",
    "pkgconfig",
    "R6",
    "RColorBrewer",
    "Rcpp",
    "RcppArmadillo",
    "rlang",
    "S7",
    "scales",
    "softImpute",
    "tibble",
    "tidyselect",
    "timeDate",
    "urca",
    "utf8",
    "vctrs",
    "viridisLite",
    "withr",
    "zoo"
  ],
  "_vignettes": [
    {
      "source": "MMINP.Rmd",
      "filename": "MMINP.html",
      "title": "Introduction to MMINP",
      "author": "| Wenli Tang and GuangChuang Yu | School of Basic Medical Sciences, Southern Medical University",
      "engine": "knitr::rmarkdown",
      "headings": [
        "Introduction",
        "Usage",
        "Trainning",
        "Prediction"
      ],
      "created": "2022-03-28 10:43:20",
      "modified": "2022-07-04 03:50:11",
      "commits": 4
    }
  ],
  "_score": 4.903089986991944,
  "_indexed": true,
  "_nocasepkg": "mminp",
  "_universes": [
    "yulab-smu",
    "wenlitang"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "0.1.1",
      "date": "2026-05-25T06:22:52.000Z",
      "distro": "noble",
      "commit": "77359aeb9af3419a9c93a186f1717d1326628a62",
      "fileid": "06bdf34342b0e502885486f17eea8fda043c8c15d328107404070f46e1d541bc",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/yulab-smu/actions/runs/26386408673"
    },
    {
      "r": "4.6.0",
      "os": "linux",
      "version": "0.1.1",
      "date": "2026-05-25T06:22:50.000Z",
      "distro": "noble",
      "commit": "77359aeb9af3419a9c93a186f1717d1326628a62",
      "fileid": "b62b67f5f7ddf1feeb0ff51a82f2b84699cdf9f6aaeda9c7c5e123378b34a18a",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/yulab-smu/actions/runs/26386408673"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "0.1.1",
      "date": "2026-05-25T06:22:06.000Z",
      "commit": "77359aeb9af3419a9c93a186f1717d1326628a62",
      "fileid": "85fb2077f2931cfeed3bf510b84d27091101d7e81726875689d421763ce253fb",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/yulab-smu/actions/runs/26386408673"
    },
    {
      "r": "4.6.0",
      "os": "mac",
      "version": "0.1.1",
      "date": "2026-05-25T06:22:21.000Z",
      "commit": "77359aeb9af3419a9c93a186f1717d1326628a62",
      "fileid": "942e63f67d06efd2ce16f062d0ce8e7ce0c736703275df657c3d6e4f0fe23a66",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/yulab-smu/actions/runs/26386408673"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "0.1.1",
      "date": "2026-05-25T06:22:51.000Z",
      "commit": "77359aeb9af3419a9c93a186f1717d1326628a62",
      "fileid": "bd1d8007a9dd27e7ca6a081b722c78fafdedad0ea4ad585e332cc36eb476dcc9",
      "status": "success",
      "buildurl": "https://github.com/r-universe/yulab-smu/actions/runs/26386408673"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "0.1.1",
      "date": "2026-05-25T06:22:00.000Z",
      "commit": "77359aeb9af3419a9c93a186f1717d1326628a62",
      "fileid": "975bcd731b6649889585811aec793f0bad327a1963b7d8c9c1388d34ba375b60",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/yulab-smu/actions/runs/26386408673"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "0.1.1",
      "date": "2026-05-25T06:22:14.000Z",
      "commit": "77359aeb9af3419a9c93a186f1717d1326628a62",
      "fileid": "567017a1a4e2a0e337eada3a19cc10b9e057942d2f206b1f6ff564e30bf7d9bb",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/yulab-smu/actions/runs/26386408673"
    },
    {
      "r": "4.6.0",
      "os": "win",
      "version": "0.1.1",
      "date": "2026-05-25T06:22:05.000Z",
      "commit": "77359aeb9af3419a9c93a186f1717d1326628a62",
      "fileid": "46bfed542583a399b52912b74fa24d635d366991a7cdb75e993120f9d98e1ad1",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/yulab-smu/actions/runs/26386408673"
    }
  ]
}