{
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  "Title": "Sequence Manipulation Utilities",
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  "Description": "Tools for reading and writing biological sequences in\nmultiple formats, including 'FASTA', 'PHYLIP', 'CLUSTAL',\n'STOCKHOLM', 'MEGA' and 'GenBank'. Supports interleaved and\nsequential layouts where applicable, converts between formats,\nand manipulates sequence sets (e.g., filtering by patterns and\ncomputing consensus sequences from alignments). Also includes\nfunctions to download nucleotide records from NCBI by\naccession.",
  "VignetteBuilder": "knitr",
  "ByteCompile": "true",
  "URL": "https://github.com/YuLab-SMU/seqmagick",
  "BugReports": "https://github.com/YuLab-SMU/seqmagick/issues",
  "License": "Artistic-2.0",
  "Encoding": "UTF-8",
  "RoxygenNote": "7.3.3",
  "Config/pak/sysreqs": "cmake make libuv1-dev zlib1g-dev",
  "Repository": "https://yulab-smu.r-universe.dev",
  "Date/Publication": "2026-01-31 07:39:40 UTC",
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  "Maintainer": "Guangchuang Yu <guangchuangyu@gmail.com>",
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    "message": "use yulab.utils:::mydownload\n",
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    "email": "guangchuangyu@gmail.com",
    "login": "guangchuangyu",
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    "description": "Professor of Bioinformatics at Southern Medical University.",
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  "_usedby": 2,
  "_updates": [
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    "name": "Bioinformatics Group @ SMU",
    "followers": 697,
    "description": "Research group led by Prof. Guangchuang Yu in School of Basic Medical Sciences, Southern Medical University"
  },
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  "_devurl": "https://github.com/yulab-smu/seqmagick",
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  "_rbuild": "4.6.1",
  "_assets": [
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    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/NEWS.html",
    "extra/NEWS.txt",
    "extra/seqmagick.html",
    "manual.pdf"
  ],
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  "_realowner": "yulab-smu",
  "_cranurl": true,
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      "date": "2019-12-17"
    },
    {
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      "date": "2019-12-18"
    },
    {
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      "date": "2019-12-19"
    },
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      "date": "2020-09-22"
    },
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      "date": "2021-04-25"
    },
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      "date": "2023-06-27"
    },
    {
      "version": "0.1.7",
      "date": "2024-01-09"
    },
    {
      "version": "0.1.8",
      "date": "2026-01-31"
    }
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    "bam2DNAStringSet2",
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    "bs_hamming",
    "bs_rename",
    "clw_read",
    "consensus",
    "download_genbank",
    "fa_combine",
    "fa_filter",
    "fa_read",
    "fa_rename",
    "fa_to_interleaved",
    "fa_to_sequential",
    "fa_write",
    "fas2phy",
    "gb_read",
    "get_id",
    "mega_read",
    "ncbi_fa_read",
    "phy_read",
    "phy_write",
    "phy2fas",
    "renameTXT",
    "replaceInside",
    "seqlen",
    "sth_read"
  ],
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    {
      "page": "bam2DNAStringSet",
      "title": "bam2DNAStringSet",
      "topics": [
        "bam2DNAStringSet"
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    {
      "page": "bam2DNAStringSet2",
      "title": "bam2DNAStringSet2",
      "topics": [
        "bam2DNAStringSet2"
      ]
    },
    {
      "page": "bs_aln",
      "title": "bs_aln",
      "topics": [
        "bs_aln"
      ]
    },
    {
      "page": "bs_filter",
      "title": "bs_filter",
      "topics": [
        "bs_filter"
      ]
    },
    {
      "page": "bs_hamming",
      "title": "bs_hamming",
      "topics": [
        "bs_hamming"
      ]
    },
    {
      "page": "bs_rename",
      "title": "bs_rename",
      "topics": [
        "bs_rename"
      ]
    },
    {
      "page": "consensus",
      "title": "consensus",
      "topics": [
        "bs_consensus",
        "consensus"
      ]
    },
    {
      "page": "download_genbank",
      "title": "download_genbank",
      "topics": [
        "download_genbank"
      ]
    },
    {
      "page": "fa_combine",
      "title": "fa_combine",
      "topics": [
        "fa_combine"
      ]
    },
    {
      "page": "fa_filter",
      "title": "fa_filter",
      "topics": [
        "fa_filter"
      ]
    },
    {
      "page": "fa_rename",
      "title": "fa_rename",
      "topics": [
        "fa_rename"
      ]
    },
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      "title": "fa_to_interleaved",
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        "fa_to_sequential"
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      "title": "fa_write",
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      ]
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    {
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      "title": "fas2phy",
      "topics": [
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      ]
    },
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      ]
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        "fa_read",
        "mega_read",
        "sth_read"
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    },
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      ]
    },
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      "title": "seqlen",
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        "seqlen"
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    "cli",
    "crayon",
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      "filename": "seqmagick.html",
      "title": "seqmagick: sequence manipulation",
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