{ "_id": "6a228a4ccd65a98ecbd54316", "Package": "tidydr", "Title": "Unify Dimensionality Reduction Results", "Version": "0.0.6", "Authors@R": "c(\nperson(\"Guangchuang\", \"Yu\", , \"guangchuangyu@gmail.com\", role = c(\"aut\", \"cre\", \"cph\"),\ncomment = c(ORCID = \"0000-0002-6485-8781\")),\nperson(\"Shuangbin\", \"Xu\", , \"xshuangbin@163.com\", role = \"aut\",\ncomment = c(ORCID = \"0000-0003-3513-5362\")),\nperson(\"Erqiang\", \"Hu\", , \"13766876214@163.com\", role = \"ctb\")\n)", "Description": "Dimensionality reduction (DR) is widely used in many\ndomain for analyzing and visualizing high-dimensional data.\n'tidydr' provides uniform output and is compatible with\nmultiple methods, including 'prcomp', 'mds', 'Rtsne'. etc.", "VignetteBuilder": "knitr", "ByteCompile": "true", "License": "Artistic-2.0", "URL": "https://github.com/YuLab-SMU/tidydr/", "BugReports": "https://github.com/YuLab-SMU/tidydr/issues", "Encoding": "UTF-8", "Roxygen": "list(markdown = TRUE)", "RoxygenNote": "7.3.2", "Config/pak/sysreqs": "cmake make libuv1-dev", "Repository": "https://yulab-smu.r-universe.dev", "Date/Publication": "2025-07-25 23:13:30 UTC", "RemoteUrl": "https://github.com/yulab-smu/tidydr", "RemoteRef": "HEAD", "RemoteSha": "14c7b7a80eea369a65585a8274bfce461ec4a580", "NeedsCompilation": "no", "Packaged": { "Date": "2026-06-05 08:32:26 UTC", "User": "root" }, "Author": "Guangchuang Yu [aut, cre, cph] (ORCID:\n),\nShuangbin Xu [aut] (ORCID: ),\nErqiang Hu [ctb]", "Maintainer": "Guangchuang Yu ", "MD5sum": "ebae353a29fe1dcdc3bb76b6598e5926", "_user": "yulab-smu", "_type": "src", "_file": "tidydr_0.0.6.tar.gz", "_fileid": "7a2b52beb5d094f52cd417ed3385aef6fb6311a7eed779d0de7576033f074342", "_filesize": 228182, "_sha256": "7a2b52beb5d094f52cd417ed3385aef6fb6311a7eed779d0de7576033f074342", "_created": "2026-06-05T08:32:26.000Z", "_published": "2026-06-05T08:35:24.831Z", "_distro": "noble", "_jobs": [ { "job": 79692646653, "time": 146, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "7432306817" }, { "job": 79692646644, "time": 137, "config": "linux-release-x86_64", "r": "4.6.0", "check": "OK", "artifact": "7432304205" }, { "job": 79692646663, "time": 96, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "OK", "artifact": "7432291256" }, { "job": 79692646666, "time": 107, "config": "macos-release-arm64", "r": "4.6.0", "check": "OK", "artifact": "7432294067" }, { "job": 79692167338, "time": 193, "config": "source", "r": "4.6.0", "check": "OK", "artifact": "7432260610" }, { "job": 79692646661, "time": 114, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "7432297409" }, { "job": 79692646723, "time": 98, "config": "windows-devel", "r": "4.7.0", "check": "OK", "artifact": "7432291699" }, { "job": 79692646657, "time": 90, "config": "windows-oldrel", "r": "4.5.3", "check": "OK", "artifact": "7432289226" }, { "job": 79692646697, "time": 85, "config": "windows-release", "r": "4.6.0", "check": "OK", "artifact": "7432288035" } ], "_buildurl": "https://github.com/r-universe/yulab-smu/actions/runs/27004346937", "_status": "success", "_host": "GitHub-Actions", "_upstream": "https://github.com/yulab-smu/tidydr", "_commit": { "id": "14c7b7a80eea369a65585a8274bfce461ec4a580", "author": "Guangchuang Yu ", "committer": "Guangchuang Yu ", "message": "on cran\n", "time": 1753485210 }, "_maintainer": { "name": "Guangchuang Yu", "email": "guangchuangyu@gmail.com", "login": "guangchuangyu", "twitter": "@guangchuangyu", "description": "Professor of Bioinformatics at Southern Medical University.", "uuid": 626539, "orcid": "0000-0002-6485-8781" }, "_registered": true, "_dependencies": [ { "package": "cluster", "role": "Imports" }, { "package": "ggfun", "role": "Imports" }, { "package": "ggplot2", "role": "Imports" }, { "package": "grid", "role": "Imports" }, { "package": "rlang", "role": "Imports" }, { "package": "stats", "role": "Imports" }, { "package": "utils", "role": "Imports" }, { "package": "knitr", "role": "Suggests" }, { "package": "rmarkdown", "role": "Suggests" }, { "package": "prettydoc", "role": "Suggests" }, { "package": "SingleCellExperiment", "role": "Suggests" }, { "package": "SummarizedExperiment", "role": "Suggests" } ], "_owner": "yulab-smu", "_selfowned": true, "_usedby": 59, "_updates": [ { "week": "2025-25", "n": 2 }, { "week": "2025-30", "n": 1 } ], "_tags": [], "_stars": 15, "_contributors": [ { "user": "guangchuangyu", "count": 22, "uuid": 626539 }, { "user": "nyzhoulang", "count": 5, "uuid": 46915370 }, { "user": "teunbrand", "count": 1, "uuid": 49372158 }, { "user": "huerqiang", "count": 1, "uuid": 48857018 } ], "_userbio": { "uuid": 40430016, "type": "organization", "name": "Bioinformatics Group @ SMU", "description": "Research group led by Prof. Guangchuang Yu in School of Basic Medical Sciences, Southern Medical University" }, "_downloads": { "count": 28120, "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/tidydr" }, "_devurl": "https://github.com/yulab-smu/tidydr", "_searchresults": 163, "_rbuild": "4.6.0", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/NEWS.html", "extra/NEWS.txt", "extra/tidydr.html", "manual.pdf" ], "_homeurl": "https://github.com/yulab-smu/tidydr", "_realowner": "yulab-smu", "_cranurl": true, "_releases": [ { "version": "0.0.3", "date": "2021-12-08" }, { "version": "0.0.4", "date": "2022-03-16" }, { "version": "0.0.5", "date": "2023-03-08" }, { "version": "0.0.6", "date": "2025-07-25" } ], "_exports": [ "aes", "autoplot", "available_methods", "dr", "dr_extract", "element_line2", "nk", "theme_dr", "theme_noaxis" ], "_help": [ { "page": "available_methods", "title": "List dimensionality reduction methods currently available", "topics": [ "available_methods" ] }, { "page": "dr", "title": "dr", "topics": [ "dr" ] }, { "page": "dr-extract", "title": "dr_extract", "topics": [ "dr_extract" ] }, { "page": "element_line2", "title": "element_line2", "topics": [ "element_line2" ] }, { "page": "nk", "title": "nk", "topics": [ "nk" ] }, { "page": "theme_dr", "title": "theme_dr", "topics": [ "theme_dr" ] }, { "page": "theme_noaxis", "title": "theme_noaxis", "topics": [ "theme_noaxis" ] } ], "_rundeps": [ "cli", "cluster", "cpp11", "digest", "dplyr", "farver", "fs", "generics", "ggfun", "ggplot2", "glue", "gtable", "isoband", "labeling", "lifecycle", "magrittr", "pillar", "pkgconfig", "R6", "rappdirs", "RColorBrewer", "rlang", "S7", "scales", "tibble", "tidyselect", "utf8", "vctrs", "viridisLite", "withr", "yulab.utils" ], "_vignettes": [ { "source": "tidydr.Rmd", "filename": "tidydr.html", "title": "Unify Dimensionality Reduction Results", "author": "Guangchuang Yu School of Basic Medical Sciences, Southern Medical University", "engine": "knitr::rmarkdown", "headings": [ "Interface for dimensionality reduction methods", "Visualization" ], "created": "2021-12-07 08:24:20", "modified": "2022-03-16 03:05:55", "commits": 4 } ], "_score": 9.863418696552877, "_indexed": true, "_nocasepkg": "tidydr", "_universes": [ "yulab-smu", "guangchuangyu" ], "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "0.0.6", "date": "2026-06-05T08:34:37.000Z", "distro": "noble", "commit": "14c7b7a80eea369a65585a8274bfce461ec4a580", "fileid": "7d765ceae6a127c2b48b772c44970792d5110daced1afadf72e17c4f1d80a6be", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/yulab-smu/actions/runs/27004346937" }, { "r": "4.6.0", "os": "linux", "version": "0.0.6", "date": "2026-06-05T08:34:30.000Z", "distro": "noble", "commit": "14c7b7a80eea369a65585a8274bfce461ec4a580", "fileid": "22d26bfec15286ecd14ee1e268cd97f6005d4c9c3bb61a3c044dba985139d7b0", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/yulab-smu/actions/runs/27004346937" }, { "r": "4.5.3", "os": "mac", "version": "0.0.6", "date": "2026-06-05T08:33:56.000Z", "commit": "14c7b7a80eea369a65585a8274bfce461ec4a580", "fileid": "95906b842b00b2877549472c4ec3b31f1780f44bb4f54ba99555d933f040df9b", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/yulab-smu/actions/runs/27004346937" }, { "r": "4.6.0", "os": "mac", "version": "0.0.6", "date": "2026-06-05T08:34:03.000Z", "commit": "14c7b7a80eea369a65585a8274bfce461ec4a580", "fileid": "e832415540f36953021aeb988e2e82ac98fe6fdb5db718eea79ed92475ccfed0", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/yulab-smu/actions/runs/27004346937" }, { "r": "4.6.0", "os": "wasm", "version": "0.0.6", "date": "2026-06-05T08:34:36.000Z", "commit": "14c7b7a80eea369a65585a8274bfce461ec4a580", "fileid": "2f53a017632c4629353822128f2b99b3f8edb9892bef891f2b1891aa955d2e20", "status": "success", "buildurl": "https://github.com/r-universe/yulab-smu/actions/runs/27004346937" }, { "r": "4.7.0", "os": "win", "version": "0.0.6", "date": "2026-06-05T08:33:43.000Z", "commit": "14c7b7a80eea369a65585a8274bfce461ec4a580", "fileid": "b377711ef59b0ab1e297fa6798c7e5704227d2f7f04ad442c2c685c297540369", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/yulab-smu/actions/runs/27004346937" }, { "r": "4.5.3", "os": "win", "version": "0.0.6", "date": "2026-06-05T08:33:37.000Z", "commit": "14c7b7a80eea369a65585a8274bfce461ec4a580", "fileid": "bb686e65e363d34ea46a0a4d2da8e225a1d5ef543294c1534c5250c12b7579d7", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/yulab-smu/actions/runs/27004346937" }, { "r": "4.6.0", "os": "win", "version": "0.0.6", "date": "2026-06-05T08:33:33.000Z", "commit": "14c7b7a80eea369a65585a8274bfce461ec4a580", "fileid": "49ccd1bc591ebeca067a3501f61c4017efd631f17a5e10eb37ee48aa5bf34a80", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/yulab-smu/actions/runs/27004346937" } ] }