{ "_id": "6aba2ba599f7aa8c6aa3dd4a", "Package": "wikiprofiler", "Type": "Package", "Title": "Data Integration and Visualization on 'WikiPathways' Graphics", "Version": "0.1.7", "Authors@R": "c(\nperson(\"Guangchuang\", \"Yu\", email = \"guangchuangyu@gmail.com\", role = c(\"aut\", \"cre\", \"cph\"), comment = c(ORCID = \"0000-0002-6485-8781\")),\nperson(\"Yihao\", \"Chen\", email = \"olivercyh@foxmail.com\", role = \"aut\")\n)", "Description": "Retrieves pathway graphics from 'WikiPathways' and maps\nuser-supplied quantitative data, such as gene expression\nvalues, onto pathway nodes. Provides a pipe-friendly grammar\nfor building pathway visualizations with layered fills, text\nhighlighting, condition-wise comparisons, data preparation\nhelpers, and batch rendering utilities.", "VignetteBuilder": "quarto", "ByteCompile": "true", "License": "Artistic-2.0", "URL": "https://yulab-smu.top/contribution-knowledge-mining/", "BugReports": "https://github.com/YuLab-SMU/wikiprofiler/issues", "Encoding": "UTF-8", "Roxygen": "list(markdown = TRUE)", "Config/roxygen2/version": "8.0.0", "Config/pak/sysreqs": "cmake make librsvg2-dev libuv1-dev", "Repository": "https://yulab-smu.r-universe.dev", "Date/Publication": "2026-08-25 11:34:55 UTC", "RemoteUrl": "https://github.com/yulab-smu/wikiprofiler", "RemoteRef": "HEAD", "RemoteSha": "f9dc0fd4d233253aed86e5193b8b529c343327cb", "NeedsCompilation": "no", "Packaged": { "Date": "2026-09-28 08:51:58 UTC", "User": "root" }, "Author": "Guangchuang Yu [aut, cre, cph] (ORCID:\n),\nYihao Chen [aut]", "Maintainer": "Guangchuang Yu ", "_user": "yulab-smu", "_type": "src", "_file": "wikiprofiler_0.1.7.tar.gz", "_fileid": "https://r2.ropensci.org/97ebcdb51a6190e0507ccaef7120f142fd28e2ce9dc2b06a9e831b2dae223d51", "_filesize": 2970112, "_sha256": "97ebcdb51a6190e0507ccaef7120f142fd28e2ce9dc2b06a9e831b2dae223d51", "_expires": "2027-01-06T08:56:02.000Z", "_created": "2026-09-28T08:51:58.000Z", "_published": "2026-09-28T08:56:04.937Z", "_jobs": [ { "job": 108855210504, "time": 200, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "10960006602" }, { "job": 108855210515, "time": 199, "config": "linux-release-x86_64", "r": "4.6.1", "check": "OK", "artifact": "10959049770" }, { "job": 108855210495, "time": 177, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "OK", "artifact": "10959812746" }, { "job": 108855210563, "time": 179, "config": "macos-release-arm64", "r": "4.6.1", "check": "OK", "artifact": "10960016556" }, { "job": 108853765846, "time": 268, "config": "source", "r": "4.6.1", "check": "OK", "artifact": "10959906586" }, { "job": 108855210494, "time": 184, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "10960280275" }, { "job": 108855210618, "time": 156, "config": "windows-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "10959743511" }, { "job": 108855210569, "time": 146, "config": "windows-oldrel-x86_64", "r": "4.5.3", "check": "OK", "artifact": "10959877214" }, { "job": 108855210558, "time": 153, "config": "windows-release-x86_64", "r": "4.6.1", "check": "OK", "artifact": "10959049672" } ], "_host": "GitHub-Actions", "_buildurl": "https://github.com/r-universe/yulab-smu/actions/runs/36399467158", "_status": "success", "_upstream": "https://github.com/yulab-smu/wikiprofiler", "_commit": { "id": "f9dc0fd4d233253aed86e5193b8b529c343327cb", "author": "Guangchuang Yu ", "committer": "Guangchuang Yu ", "message": "fix:\n", "time": 1787657695 }, "_maintainer": { "name": "Guangchuang Yu", "email": "guangchuangyu@gmail.com", "login": "guangchuangyu", "twitter": "@guangchuangyu", "description": "Professor of Bioinformatics at Southern Medical University.", "uuid": 626539, "orcid": "0000-0002-6485-8781" }, "_distro": "resolute", "_registered": true, "_dependencies": [ { "package": "ggplot2", "role": "Imports" }, { "package": "ggplotify", "role": "Imports" }, { "package": "grDevices", "role": "Imports" }, { "package": "grid", "role": "Imports" }, { "package": "gson", "role": "Imports" }, { "package": "methods", "role": "Imports" }, { "package": "rsvg", "role": "Imports" }, { "package": "yulab.utils", "version": ">= 0.1.7", "role": "Imports" }, { "package": "clusterProfiler", "role": "Suggests" }, { "package": "DOSE", "role": "Suggests" }, { "package": "knitr", "role": "Suggests" }, { "package": "org.Hs.eg.db", "role": "Suggests" }, { "package": "quarto", "role": "Suggests" }, { "package": "rmarkdown", "role": "Suggests" } ], "_owner": "yulab-smu", "_selfowned": true, "_usedby": 0, "_updates": [ { "week": "2026-34", "n": 2 }, { "week": "2026-35", "n": 2 } ], "_tags": [], "_stars": 6, "_contributors": [ { "user": "chengxugorilla", "count": 61, "uuid": 94209830 }, { "user": "guangchuangyu", "count": 36, "uuid": 626539 }, { "user": "ayushi-agrawal-gladstone", "count": 1, "uuid": 88406934 }, { "user": "olivroy", "count": 1, "uuid": 52606734 } ], "_userbio": { "uuid": 40430016, "type": "organization", "name": "Bioinformatics Group @ SMU", "followers": 725, "description": "Research group led by Prof. Guangchuang Yu in School of Basic Medical Sciences, Southern Medical University" }, "_downloads": { "count": 412, "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/wikiprofiler" }, "_devurl": "https://github.com/yulab-smu/wikiprofiler", "_searchresults": 0, "_quarto": true, "_topics": [ "quarto" ], "_rbuild": "4.6.1", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/manual.pdf", "extra/NEWS.html", "extra/NEWS.txt", "extra/readme.html", "extra/readme.md", "extra/wikiprofiler.html" ], "_homeurl": "https://github.com/yulab-smu/wikiprofiler", "_realowner": "yulab-smu", "_cranurl": true, "_releases": [ { "version": "0.1.2", "date": "2023-09-06" }, { "version": "0.1.3", "date": "2023-09-28" }, { "version": "0.1.5", "date": "2024-08-26" }, { "version": "0.1.6", "date": "2025-05-02" }, { "version": "0.1.7", "date": "2026-08-25" } ], "_exports": [ "ggsave", "read.wp", "wp_bgfill", "wp_comparefill", "wp_map", "wp_render", "wp_shadowtext", "wpplot", "wpsave" ], "_help": [ { "page": "read-wp", "title": "read.wp", "topics": [ "read.wp" ] }, { "page": "wp_bgfill", "title": "Fill the background of gene with color according to amount of gene expression.", "topics": [ "wp_bgfill" ] }, { "page": "wp_comparefill", "title": "Visualize pathway differences between two conditions", "topics": [ "wp_comparefill" ] }, { "page": "wp_map", "title": "Map user values to pathway symbols", "topics": [ "wp_map" ] }, { "page": "wp_render", "title": "Render one or more WikiPathways entries", "topics": [ "wp_render" ] }, { "page": "wp_shadowtext", "title": "Add halo above gene name to get a clear view.", "topics": [ "wp_shadowtext" ] }, { "page": "wpplot", "title": "Input specific wikipathways ID to get an output in class of wpplot.", "topics": [ "wpplot" ] }, { "page": "wpsave", "title": "Save the 'wpplot' object to a file.", "topics": [ "wpsave" ] } ], "_readme": "https://github.com/yulab-smu/wikiprofiler/raw/HEAD/README.md", "_rundeps": [ "cli", "cpp11", "digest", "farver", "fs", "ggplot2", "ggplotify", "glue", "gridGraphics", "gson", "gtable", "isoband", "jsonlite", "labeling", "lifecycle", "R6", "rappdirs", "RColorBrewer", "rlang", "rsvg", "S7", "scales", "vctrs", "viridisLite", "withr", "yulab.utils" ], "_vignettes": [ { "source": "wikiprofiler.qmd", "filename": "wikiprofiler.html", "title": "Visualizing pathway-level data with wikiprofiler", "engine": "quarto::html", "headings": [ "Overview", "Setup", "A minimal input object", "Build a single pathway plot with pipes", "Prepare plotting values with wp_map()", "Compare two conditions with wp_comparefill()", "Render multiple pathways with wp_render()", "A typical analysis pattern", "Summary" ], "created": "2026-08-25 11:34:55", "modified": "2026-08-25 11:34:55", "commits": 1 } ], "_score": 5.2552725051033065, "_indexed": true, "_nocasepkg": "wikiprofiler", "_universes": [ "yulab-smu", "guangchuangyu" ], "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "0.1.7", "date": "2026-09-28T08:55:09.000Z", "distro": "resolute", "commit": "f9dc0fd4d233253aed86e5193b8b529c343327cb", "fileid": "https://r2.ropensci.org/43b799b29f90abaf9d58beba9e556529cdd8b601eb68bf298f0f03190094b559", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/yulab-smu/actions/runs/36399467158" }, { "r": "4.6.1", "os": "linux", "version": "0.1.7", "date": "2026-09-28T08:55:07.000Z", "distro": "resolute", "commit": "f9dc0fd4d233253aed86e5193b8b529c343327cb", "fileid": "https://r2.ropensci.org/c0cf69fa30ccf6ae582961ed7e4e4396995bf0130e50936227502b20c6c55eec", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/yulab-smu/actions/runs/36399467158" }, { "r": "4.5.3", "os": "mac", "version": "0.1.7", "date": "2026-09-28T08:54:50.000Z", "commit": "f9dc0fd4d233253aed86e5193b8b529c343327cb", "fileid": "https://r2.ropensci.org/9a8d454d32f132ef959952ec554fa48c0958f55bf211b0a361ee32ce5411f3fa", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/yulab-smu/actions/runs/36399467158" }, { "r": "4.6.1", "os": "mac", "version": "0.1.7", "date": "2026-09-28T08:54:54.000Z", "commit": "f9dc0fd4d233253aed86e5193b8b529c343327cb", "fileid": "https://r2.ropensci.org/8272399a75ba77e418fe63ad4218c11404eae5f2d2f5f701c686d0133daeab0a", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/yulab-smu/actions/runs/36399467158" }, { "r": "4.6.0", "os": "wasm", "version": "0.1.7", "date": "2026-09-28T08:55:18.000Z", "commit": "f9dc0fd4d233253aed86e5193b8b529c343327cb", "fileid": "https://r2.ropensci.org/62c513117437f84e146d5a5be021cb9e3a0e1cfda50a58684491a5ba0883abcc", "status": "success", "buildurl": "https://github.com/r-universe/yulab-smu/actions/runs/36399467158" }, { "r": "4.7.0", "os": "win", "version": "0.1.7", "date": "2026-09-28T08:54:13.000Z", "commit": "f9dc0fd4d233253aed86e5193b8b529c343327cb", "fileid": "https://r2.ropensci.org/ca15f22813826727b61f838cf30051f472ee938c66934c9b1af2a1e67dd65fc7", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/yulab-smu/actions/runs/36399467158" }, { "r": "4.5.3", "os": "win", "version": "0.1.7", "date": "2026-09-28T08:54:06.000Z", "commit": "f9dc0fd4d233253aed86e5193b8b529c343327cb", "fileid": "https://r2.ropensci.org/09d95925390b44c927330eaf0223c622948dd64aeed7c1162fd7d160f2f4f990", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/yulab-smu/actions/runs/36399467158" }, { "r": "4.6.1", "os": "win", "version": "0.1.7", "date": "2026-09-28T08:54:10.000Z", "commit": "f9dc0fd4d233253aed86e5193b8b529c343327cb", "fileid": "https://r2.ropensci.org/9cbe8aac7aa9c11001d39217fff734711cab8a3593c7df9fd5363b0e1be63c60", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/yulab-smu/actions/runs/36399467158" } ] }