Package: seqmagick
Title: Sequence Manipulation Utilities
Version: 0.1.8
Authors@R: c(
    person("Guangchuang", "Yu",     email = "guangchuangyu@gmail.com", role = c("aut", "cre"), comment = c(ORCID = "0000-0002-6485-8781"))
    )
Description: Tools for reading and writing biological sequences in
        multiple formats, including 'FASTA', 'PHYLIP', 'CLUSTAL',
        'STOCKHOLM', 'MEGA' and 'GenBank'. Supports interleaved and
        sequential layouts where applicable, converts between formats,
        and manipulates sequence sets (e.g., filtering by patterns and
        computing consensus sequences from alignments). Also includes
        functions to download nucleotide records from NCBI by
        accession.
Depends: R (>= 4.1.0)
Imports: Biostrings, magrittr, stats, utils, yulab.utils (> 0.1.6)
Suggests: knitr, rmarkdown, GenomicAlignments, GenomicRanges, IRanges,
        muscle, Rsamtools, prettydoc
VignetteBuilder: knitr
ByteCompile: true
URL: https://github.com/YuLab-SMU/seqmagick
BugReports: https://github.com/YuLab-SMU/seqmagick/issues
License: Artistic-2.0
Encoding: UTF-8
RoxygenNote: 7.3.3
Config/pak/sysreqs: cmake make libuv1-dev zlib1g-dev
Repository: https://yulab-smu.r-universe.dev
Date/Publication: 2026-01-31 07:39:40 UTC
RemoteUrl: https://github.com/yulab-smu/seqmagick
RemoteRef: HEAD
RemoteSha: 9b166bc46d64cda79c834c6f5cdc39f2b2854614
NeedsCompilation: no
Packaged: 2026-06-11 10:24:49 UTC; root
Author: Guangchuang Yu [aut, cre] (ORCID:
    <https://orcid.org/0000-0002-6485-8781>)
Maintainer: Guangchuang Yu <guangchuangyu@gmail.com>