Package: shinyTempSignal
Title: Explore Temporal and Other Phylogenetic Signals
Version: 0.0.8
Authors@R: 
    	c(person(given = "Guangchuang", family = "Yu", email = "guangchuangyu@gmail.com", role = c("aut", "cre", "cph"), 
                comment = c(ORCID = "0000-0002-6485-8781")),
          person(given = "Xiao",     family = "Luo",  email = "l77880853349@163.com",     role  = "ctb"),       
          person(given = "Li",       family = "Zhan", email = "smu18575877413@gmail.com", role  = "ctb"),
          person(given = "Xuanan",   family = "Zhu",  email = "1063785553@qq.com",        role = "ctb"),
          person(given = "Jianfeng", family = "Lin",  email = "415186984@qq.com",         role = "ctb")
        )
Description: Sequences sampled at different time points can be used to
        infer molecular phylogenies on natural time scales, but if the
        sequences records inaccurate sampling times, that are not the
        actual sampling times, then it will affect the molecular
        phylogenetic analysis. This shiny application helps exploring
        temporal characteristics of the evolutionary trees through
        linear regression analysis and with the ability to identify and
        remove incorrect labels. The method was extended to support
        exploring other phylogenetic signals under strict and relaxed
        models.
License: GPL-3
Depends: R (>= 4.1.0)
Imports: ape, forecast, ggplot2, ggprism, ggpmisc, ggtree, golem (>=
        0.3.1), shiny (>= 1.6.0), shinydashboard, shinyjs,
        shinyWidgets, stats, treeio, yulab.utils (>= 0.1.4), nlme
Suggests: attempt, conflicted, config (>= 0.3.1), glue, htmltools,
        knitr, prettydoc, processx, rmarkdown, testthat (>= 3.0.0)
VignetteBuilder: knitr
Encoding: UTF-8
RoxygenNote: 7.3.1
Config/testthat/edition: 3
URL: https://github.com/YuLab-SMU/shinyTempSignal,
        https://www.sciencedirect.com/science/article/pii/S167385272400033X
BugReports: https://github.com/YuLab-SMU/shinyTempSignal/issues
Config/pak/sysreqs: libcairo2-dev cmake libfontconfig1-dev
        libfreetype6-dev make libicu-dev libpng-dev libuv1-dev
        zlib1g-dev
Repository: https://yulab-smu.r-universe.dev
Date/Publication: 2024-03-06 10:08:32 UTC
RemoteUrl: https://github.com/yulab-smu/shinytempsignal
RemoteRef: HEAD
RemoteSha: 59da65406a5afaa13f89fd18b953021c1a842da9
NeedsCompilation: no
Packaged: 2026-06-11 10:20:58 UTC; root
Author: Guangchuang Yu [aut, cre, cph] (ORCID:
    <https://orcid.org/0000-0002-6485-8781>),
  Xiao Luo [ctb],
  Li Zhan [ctb],
  Xuanan Zhu [ctb],
  Jianfeng Lin [ctb]
Maintainer: Guangchuang Yu <guangchuangyu@gmail.com>