Package 'shinyTempSignal'

The application server-side

Description

The application server-side

Usage

app_server(input, output, session)

Arguments

input	Internal parameter
output	Internal parameter
session	Internal parameter

---

The application User-Interface

Description

The application User-Interface

Usage

app_ui(request)

Arguments

request

Internal parameter

---

Convert dates according to date format

Description

Convert dates according to date format

Usage

dateNumeric(date, format)

Arguments

date	input a data extracted from labels, character
format	input format of the date, character

Value

Returns a date of numeric type, numeric

Examples

dateNumeric(date = "1999-12-07", format = "yyyy-MM-dd")

---

Example data: a tree of 76 H3 hemagglutinin gene sequences of a lineage containing swine and human influenza A viruses

Description

This example data was reported on Liang et al. 2014

Format

a tree with 76 sequences

Value

a tree, phylo

Examples

data(MCC_FluA_H3_tree)

---

Run the Shiny Application

Description

Run the Shiny Application

Usage

run_shinyTempSignal(
  onStart = NULL,
  options = list(),
  enableBookmarking = NULL,
  uiPattern = "/",
  ...
)

Arguments

onStart	A function that will be called before the app is actually run. This is only needed for shinyAppObj, since in the shinyAppDir case, a global.R file can be used for this purpose.
options	Named options that should be passed to the runApp call (these can be any of the following: "port", "launch.browser", "host", "quiet", "display.mode" and "test.mode"). You can also specify width and height parameters which provide a hint to the embedding environment about the ideal height/width for the app.
enableBookmarking	Can be one of "url", "server", or "disable". The default value, NULL, will respect the setting from any previous calls to enableBookmarking(). See enableBookmarking() for more information on bookmarking your app.
uiPattern	A regular expression that will be applied to each GET request to determine whether the ui should be used to handle the request. Note that the entire request path must match the regular expression in order for the match to be considered successful.
...	arguments to pass to golem_opts. See '?golem::get_golem_options' for more details.

Value

Shiny application object

Examples

if (interactive()) {
  run_shinyTempSignal()
}

---

shinyTempSignal_set_theme

Description

set default theme

Usage

shinyTempSignal_set_theme(theme)

Arguments

theme

a ggplot theme

Value

No value return

---