NEWS
tidydr 0.0.5.001
nk()
for choose k (number of clusters) (2023-03-17, Fri)
- output is a
silinfo
object with print()
, summary()
and autoplot()
methods
tidydr 0.0.5 (2023-03-08)
autoplot
method for SingleCellExperiment
object (2022-11-01, Tue)
tidydr 0.0.4 (2022-03-16)
- added
available_methods()
to show available DR methods (2022-3-15, Tue)
- update
dr_extract
to support methods work for distance objects (2022-3-14, Mon)
uwot::umap()
uwot::tumap()
uwot::lvish()
- fixed the error: mapping is missing with no default (2022-3-14, Mon)
tidydr 0.0.3 (2021-12-08)
- update Rd files with return value (2021-12-08, Wed)
- use
theme_minimal()
as base theme in theme_dr()
(2021-12-07, Tue)
tidydr 0.0.2
- add vignette (2021-12-07, Tue)
print()
method for DrResult
- support
metadata
in fortify()
, ggplot()
and autoplot()
- update
dr_extract
to support methods work for distance objects (2021-12-5, Sun)
stats::cmdscale
MASS::sammon
vegan::metaMDS
ape::pcoa
smacof::mds
vegan::wcmdscale
ecodist::pco
labdsv::pco
ade4::dudi.pco
- add new slots
eigenvalue
and stress
to the DrResult
class
tidydr 0.0.1
theme_dr()
that add shorten version of x and y axis
theme_noaxis()
to remove axis elements
autoplot()
to plot dr()
output
- extend
ggplot()
to support dr()
output
dr()
to unify dimension reduction result
- supports
stats::prcomp
and Rtsne::Rtsne
DrResult
class
- data: original data
- drdata: Dr result, i.e., point coordinations
- .call: function call