NEWS

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tidydr 0.0.6 (2025-07-25)

• S3 method consistency with ggplot2 (v=4.0.0) (2025-06-21, Sat, #4)
• nk() for choose k (number of clusters) (2023-03-17, Fri)
  • output is a silinfo object with print(), summary() and autoplot() methods

tidydr 0.0.5 (2023-03-08)

• autoplot method for SingleCellExperiment object (2022-11-01, Tue)

tidydr 0.0.4 (2022-03-16)

• added available_methods() to show available DR methods (2022-3-15, Tue)
• update dr_extract to support methods work for distance objects (2022-3-14, Mon)
  • uwot::umap()
  • uwot::tumap()
  • uwot::lvish()
• fixed the error: mapping is missing with no default (2022-3-14, Mon)

tidydr 0.0.3 (2021-12-08)

• update Rd files with return value (2021-12-08, Wed)
• use theme_minimal() as base theme in theme_dr() (2021-12-07, Tue)

tidydr 0.0.2

• add vignette (2021-12-07, Tue)
• print() method for DrResult
• support metadata in fortify(), ggplot() and autoplot()
• update dr_extract to support methods work for distance objects (2021-12-5, Sun)
  • stats::cmdscale
  • MASS::sammon
  • vegan::metaMDS
  • ape::pcoa
  • smacof::mds
  • vegan::wcmdscale
  • ecodist::pco
  • labdsv::pco
  • ade4::dudi.pco
• add new slots eigenvalue and stress to the DrResult class

tidydr 0.0.1

• theme_dr() that add shorten version of x and y axis
• theme_noaxis() to remove axis elements
• autoplot() to plot dr() output
• extend ggplot() to support dr() output
• dr() to unify dimension reduction result
  • supports stats::prcomp and Rtsne::Rtsne
• DrResult class
  • data: original data
  • drdata: Dr result, i.e., point coordinations
  • .call: function call