Package: shinyTempSignal 0.0.8

Guangchuang Yu

shinyTempSignal: Explore Temporal and Other Phylogenetic Signals

Sequences sampled at different time points can be used to infer molecular phylogenies on natural time scales, but if the sequences records inaccurate sampling times, that are not the actual sampling times, then it will affect the molecular phylogenetic analysis. This shiny application helps exploring temporal characteristics of the evolutionary trees through linear regression analysis and with the ability to identify and remove incorrect labels. The method was extended to support exploring other phylogenetic signals under strict and relaxed models.

Authors:Guangchuang Yu [aut, cre, cph], Xiao Luo [ctb], Li Zhan [ctb], Xuanan Zhu [ctb], Jianfeng Lin [ctb]

shinyTempSignal_0.0.8.tar.gz
shinyTempSignal_0.0.8.zip(r-4.7)shinyTempSignal_0.0.8.zip(r-4.6)shinyTempSignal_0.0.8.zip(r-4.5)
shinyTempSignal_0.0.8.tgz(r-4.6-any)shinyTempSignal_0.0.8.tgz(r-4.5-any)
shinyTempSignal_0.0.8.tar.gz(r-4.7-any)shinyTempSignal_0.0.8.tar.gz(r-4.6-any)
shinyTempSignal_0.0.8.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
shinyTempSignal/json (API)
NEWS

# Install 'shinyTempSignal' in R:
install.packages('shinyTempSignal', repos = c('https://yulab-smu.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/yulab-smu/shinytempsignal/issues

On CRAN:

Conda:

molecular-clockphylogeneticsshiny-app

5.26 score 9 stars 7 scripts 201 downloads 3 exports 116 dependencies

Last updated from:59da65406a. Checks:9 OK. Indexed: yes.

TargetResultTimeFilesSyslog
linux-devel-x86_64OK208
source / vignettesOK348
linux-release-x86_64OK204
macos-release-arm64OK142
macos-oldrel-arm64OK121
windows-develOK165
windows-releaseOK134
windows-oldrelOK132
wasm-releaseOK146

Exports:dateNumericrun_shinyTempSignalshinyTempSignal_set_theme

Dependencies:apeaplotattemptbase64encbitopsbootbslibcachemcaToolsclicolorspacecommonmarkconfigconfintrcpp11digestdplyrevaluatefarverfastmapfontawesomefontBitstreamVerafontLiberationfontquiverforecastfracdifffsgdtoolsgenericsggfunggiraphggplot2ggplotifyggpmiscggppggprismggtreegluegolemgridExtragridGraphicsgtableherehighrhtmltoolshtmlwidgetshttpuvisobandjquerylibjsonliteknitrlabelinglaterlatticelazyevallifecyclelmtestlubridatemagrittrMASSMatrixMatrixModelsmemoisemimenlmennetotelpatchworkpillarpkgconfigplyrpolynompromisespurrrquantregR6rappdirsRColorBrewerRcppRcppArmadillorlangrmarkdownrprojrootS7sassscalesshinyshinydashboardshinyjsshinyWidgetssourcetoolsSparseMsplus2RstringistringrsurvivalsystemfontstibbletidyrtidyselecttidytreetimechangetimeDatetinytextreeiourcautf8vctrsviridisLitewithrxfunxtablextsyamlyulab.utilszoo

Introduction of using shinyTempSignal

Guangchuang Yu School of Basic Medical Sciences, Southern Medical University

Rendered fromshinyTempSignal.Rmdusingknitr::rmarkdownon May 12 2026.

Last update: 2024-02-26
Started: 2024-01-21