Package: seqmagick 0.1.7

Guangchuang Yu

seqmagick: Sequence Manipulation Utilities

Supports reading and writing sequences for different formats (currently interleaved and sequential formats for 'FASTA' and 'PHYLIP'), file conversion, and manipulation (e.g. filter sequences that contain specify pattern, export consensus sequence from an alignment).

Authors:Guangchuang Yu [aut, cre]

seqmagick_0.1.7.tar.gz
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seqmagick_0.1.7.tgz(r-4.4-any)seqmagick_0.1.7.tgz(r-4.3-any)
seqmagick_0.1.7.tar.gz(r-4.5-noble)seqmagick_0.1.7.tar.gz(r-4.4-noble)
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seqmagick.pdf |seqmagick.html✨
seqmagick/json (API)
NEWS

Peer review:

Bug tracker:https://github.com/yulab-smu/seqmagick/issues

On CRAN:

28 exports 6 stars 2.88 score 24 dependencies 3 dependents 8 mentions 8 scripts 672 downloads

Last updated 8 months agofrom:71ead12273. Checks:OK: 7. Indexed: yes.

Exports:bam2DNAStringSetbam2DNAStringSet2bs_alnbs_consensusbs_filterbs_hammingbs_renameclw_readconsensusdownload_genbankfa_combinefa_filterfa_readfa_renamefa_to_interleavedfa_to_sequentialfa_writefas2phygb_readget_idmega_readphy_readphy_writephy2fasrenameTXTreplaceInsideseqlensth_read

Dependencies:askpassBiocGenericsBiostringsclicrayoncurldigestfsGenomeInfoDbGenomeInfoDbDatahttrIRangesjsonlitemagrittrmimeopensslR6rlangS4VectorssysUCSC.utilsXVectoryulab.utilszlibbioc