Interface for dimensionality reduction methods | Visualization | Comparing several methods | Visualizing SingleCellExperiment objects | Clustering and silhouette widths | Method-specific information | Input validation
Package: tidydr 0.0.7
Guangchuang Yu
tidydr: Unify Dimensionality Reduction Results
Dimensionality reduction is widely used in many domains for analyzing and visualizing high-dimensional data. 'tidydr' provides uniform output and is compatible with multiple methods, including 'prcomp', 'cmdscale', 'Rtsne', 'umap' and 'metaMDS'. Any function returning a numeric matrix can also be used. The unified result can be visualized directly with 'ggplot2', and several methods can be run and compared in a single call.
Authors:
tidydr_0.0.7.tar.gz
tidydr_0.0.7.zip(r-4.7-any)tidydr_0.0.7.zip(r-4.6-any)tidydr_0.0.7.zip(r-4.5-any)
tidydr_0.0.7.tgz(r-4.6-any)tidydr_0.0.7.tgz(r-4.5-any)
tidydr_0.0.7.tar.gz(r-4.7-any)tidydr_0.0.7.tar.gz(r-4.6-any)
tidydr_0.0.7.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
tidydr/json (API)
| # Install 'tidydr' in R: |
| install.packages('tidydr', repos = c('https://yulab-smu.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/yulab-smu/tidydr/issues
Last updated from:3270b64cf5. Checks:9 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel | OK | 305 | ||
| source / vignettes | OK | 260 | ||
| linux-release | OK | 305 | ||
| macos-release | OK | 290 | ||
| macos-oldrel | OK | 331 | ||
| windows-devel | OK | 289 | ||
| windows-release | OK | 238 | ||
| windows-oldrel | OK | 275 | ||
| wasm-release | OK | 145 |
Exports:aesautoplotavailable_methodsdrdr_comparedr_extractelement_line2nksilinfo_widthstheme_drtheme_noaxis
Dependencies:cliclustercpp11digestdplyrfarverfsgenericsggfunggplot2gluegtableisobandlabelinglifecyclemagrittrpillarpkgconfigR6rappdirsRColorBrewerrlangS7scalestibbletidyselectutf8vctrsviridisLitewithryulab.utils
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| List dimensionality reduction methods currently available | available_methods |
| dr | dr |
| dr_compare | dr_compare |
| dr_extract | dr_extract |
| element_line2 | element_line2 |
| nk | nk |
| silinfo_widths | silinfo_widths |
| theme_dr | theme_dr |
| theme_noaxis | theme_noaxis |